PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02760.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 361aa    MW: 39620 Da    PI: 4.7383
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02760.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.84e-07445540
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                     C+ +++++   +C+++   lC +C  + H+       Ht++
  Zmw_sc02760.1.g00090.1.am.mkhc  4 LCDFCGKQRSMVYCRSDAASLCLSCDRNVHSAnalswrHTRT 45
                                    7*****************************668888888876 PP

2zf-B_box25.52.8e-084788540
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                     C++++++++   C +++  +C++C  ++H        H+++
  Zmw_sc02760.1.g00090.1.am.mkhc 47 LCDRCGSQPAAVRCLEDNASFCQNCDWNGHDAesgaagHKRQ 88
                                    7*****************************447778888876 PP

3CCT62.41.4e-21305348144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     R+ al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ 
  Zmw_sc02760.1.g00090.1.am.mkhc 305 RDSALSRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 348
                                     899*************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
SMARTSM003361.0E-8147IPR000315B-box-type zinc finger
CDDcd000211.16E-6447No hitNo description
PROSITE profilePS501199.1724390IPR000315B-box-type zinc finger
PfamPF006432.8E-54788IPR000315B-box-type zinc finger
CDDcd000211.42E-64790No hitNo description
SMARTSM003360.0454890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.428305347IPR010402CCT domain
PfamPF062036.5E-17305347IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAALCDFCGK QRSMVYCRSD AASLCLSCDR NVHSANALSW RHTRTLLCDR CGSQPAAVRC  60
LEDNASFCQN CDWNGHDAES GAAGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN  120
CEDVISMMNI DDSGVSNHCG AMDDNQLLEI ASTTLMSDSP TGANLKSLIS SSSGDEANTL  180
PLATDQPDGP VPMMPKVSDA RVNDKFNDGT LYEDLCVDDA DLTFENYEDL FGNSHIQTEQ  240
LFDDAGIDSY FETKEMLPAD SNEVCLTGES SVGDHQDCRV SPTLNMGEPP WRPPGPDGSC  300
AGGSRDSALS RYKEKKKRRK FDKKIRYASR KARADTRRRV KGRFIKAGEA YDYDPLSPRS  360
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314318KKKRR
2314319KKKRRK
3315319KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953745.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-110COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK3YSX90.0K3YSX9_SETIT; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788